Differential gene abundance report: study

differentialabundance workflow version 1.1.1

2023-03-03

Contrasts

Comparisons were made between sample groups defined using using metadata columns, as described in the following table of contrasts:

Whole dataset pca

Treated versus Control in Condition treatment

Contrast PCA

Gene set analysis

DGEM slices

Decisions

KO versus WT in Condition genotype (blocking on batch)

Contrast PCA

Gene set analysis

DGEM slices

Decisions